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Covalent complex of E. coli transaldolase TalB with fructose-6-phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UCW PDB ENTRY 1UCW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.2 0.2 M DL-malic acid, pH 7.0, 19% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 293.2K
Crystal Properties Matthews coefficient Solvent content 2.69 54.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.656 α = 90 b = 91.152 β = 90 c = 130.725 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.91914 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.43 99.5 0.094 12.7 4.8 41815 41815
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 97.6 0.491 3.7 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UCW 2.2 29.43 39558 39703 2054 99.36 0.15586 0.1529 0.162 0.21103 0.2149 RANDOM 30.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 0.59 -2.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.334 r_sphericity_free 33.349 r_dihedral_angle_4_deg 17.938 r_sphericity_bonded 14.847 r_dihedral_angle_3_deg 14.341 r_dihedral_angle_1_deg 5.428 r_scbond_it 5.158 r_mcangle_it 5.035 r_mcbond_it 4.126 r_mcbond_other 4.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.334 r_sphericity_free 33.349 r_dihedral_angle_4_deg 17.938 r_sphericity_bonded 14.847 r_dihedral_angle_3_deg 14.341 r_dihedral_angle_1_deg 5.428 r_scbond_it 5.158 r_mcangle_it 5.035 r_mcbond_it 4.126 r_mcbond_other 4.125 r_rigid_bond_restr 3.236 r_angle_refined_deg 1.311 r_angle_other_deg 0.806 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4944 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 34
Software Software Software Name Purpose ProDC data collection PHASER phasing REFMAC refinement XDS data reduction Aimless data scaling