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1.7 Angstrom Crystal Structure of of Putative Modulator of Drug Activity (apo- form) from Yersinia pestis CO92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 295 Protein: 10.2 mg/ml, 0.1M Tris HCl (pH 8.3), Screen: JSCG+ (C6), 0.1M Phosphate-citrate (pH 4.2), 40% (v/v) PEG 300, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.76 55.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.046 α = 90 b = 72.046 β = 90 c = 166.766 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD beryllium lenses 2014-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 99.9 0.067 0.067 62.5 15.2 29069 29069 -3 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 100 0.56 0.56 6.2 15.5 1417
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 29.41 27589 27589 1407 99.92 0.14937 0.14852 0.1485 0.16591 0.1652 RANDOM 33.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 0.41 0.81 -2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.06 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_3_deg 9.683 r_long_range_B_refined 7.212 r_long_range_B_other 6.98 r_scangle_other 3.992 r_dihedral_angle_1_deg 3.941 r_mcangle_it 2.784 r_mcangle_other 2.784 r_scbond_it 2.641
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.06 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_3_deg 9.683 r_long_range_B_refined 7.212 r_long_range_B_other 6.98 r_scangle_other 3.992 r_dihedral_angle_1_deg 3.941 r_mcangle_it 2.784 r_mcangle_other 2.784 r_scbond_it 2.641 r_scbond_other 2.604 r_mcbond_it 1.795 r_mcbond_other 1.778 r_angle_refined_deg 1.432 r_angle_other_deg 0.812 r_chiral_restr 0.102 r_gen_planes_refined 0.022 r_gen_planes_other 0.017 r_bond_refined_d 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1531 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 45
Software Software Software Name Purpose Blu-Ice data collection SHELXS phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling