4S1F
Fructose-6-phosphate aldolase A from E.coli soaked in acetylacetone
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.2 | 25% PEG3350, 0.1M Tris-HCl pH 8.5, 0.2M LiCl , VAPOR DIFFUSION, HANGING DROP, temperature 293.2K |
Crystal Properties | |
---|---|
Matthews coefficient | Solvent content |
2.45 | 49.7 |
Crystal Data
Unit Cell | |
---|---|
Length ( Å ) | Angle ( ˚ ) |
a = 100.485 | α = 90 |
b = 130.709 | β = 90.21 |
c = 355.18 | γ = 90 |
Symmetry | |
---|---|
Space Group | I 1 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | PIXEL | DECTRIS PILATUS 6M | 2014-02-14 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | BESSY BEAMLINE 14.1 | 0.91841 | BESSY | 14.1 |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.242 | 48.4 | 94.8 | 0.08 | 16.8 | 3.2 | 232071 | 232071 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2.242 | 2.29 | 95.6 | 0.603 | 2.6 | 10244 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | PDB ENTRY 4RXF | 2.242 | 48.39 | 205760 | 205760 | 10991 | 98.74 | 0.23324 | 0.23324 | 0.23229 | 0.25101 | RANDOM | 43.374 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
10.37 | 3.89 | 9.36 | -19.73 |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 32.922 |
r_dihedral_angle_3_deg | 14.006 |
r_dihedral_angle_4_deg | 8.472 |
r_long_range_B_refined | 6.848 |
r_long_range_B_other | 6.824 |
r_dihedral_angle_1_deg | 5.335 |
r_mcangle_it | 4.65 |
r_mcangle_other | 4.65 |
r_scangle_other | 4.48 |
r_mcbond_it | 3.196 |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 32300 |
Nucleic Acid Atoms | |
Solvent Atoms | 745 |
Heterogen Atoms | 30 |
Software
Software | |
---|---|
Software Name | Purpose |
ProDC | data collection |
PHASER | phasing |
REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |