X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5293.225% PEG3350, 0.1M Tris-HCl pH 8.5, 0.2M LiCl , VAPOR DIFFUSION, HANGING DROP, temperature 293.2K
Crystal Properties
Matthews coefficientSolvent content
2.4549.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.485α = 90
b = 130.709β = 90.21
c = 355.18γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-02-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91841BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.24248.494.80.0816.83.2232071232071
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.2422.2995.60.6032.610244

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4RXF2.24248.392057602057601099198.740.233240.233240.232290.25101RANDOM43.374
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
10.373.899.36-19.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.922
r_dihedral_angle_3_deg14.006
r_dihedral_angle_4_deg8.472
r_long_range_B_refined6.848
r_long_range_B_other6.824
r_dihedral_angle_1_deg5.335
r_mcangle_it4.65
r_mcangle_other4.65
r_scangle_other4.48
r_mcbond_it3.196
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.922
r_dihedral_angle_3_deg14.006
r_dihedral_angle_4_deg8.472
r_long_range_B_refined6.848
r_long_range_B_other6.824
r_dihedral_angle_1_deg5.335
r_mcangle_it4.65
r_mcangle_other4.65
r_scangle_other4.48
r_mcbond_it3.196
r_mcbond_other3.196
r_scbond_it2.978
r_scbond_other2.978
r_angle_refined_deg1.142
r_angle_other_deg1.062
r_chiral_restr0.062
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.006
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms32300
Nucleic Acid Atoms
Solvent Atoms745
Heterogen Atoms30

Software

Software
Software NamePurpose
ProDCdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
Aimlessdata scaling