☰ Navigation Tabs
CHK1 kinase domain with diazacarbazole compound 19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZYS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 292 Hepes, isopropanol, PEG 8000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.52 51.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.123 α = 90 b = 65.93 β = 94.63 c = 58.117 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RIGAKU SATURN 944+ 2008-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 20 82.8 0.057 20.6 3.4 28744 23800 -3 22.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ZYS 1.86 20 -3 28744 22482 1182 82.78 0.20337 0.20125 0.2144 0.24248 0.2512 RANDOM 31.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 0.02 0.74 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.028 r_dihedral_angle_4_deg 16.836 r_dihedral_angle_3_deg 13.875 r_dihedral_angle_1_deg 5.83 r_scangle_it 4.522 r_mcangle_it 4.5 r_mcbond_it 3.816 r_scbond_it 3.252 r_angle_refined_deg 1.492 r_angle_other_deg 0.831
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.028 r_dihedral_angle_4_deg 16.836 r_dihedral_angle_3_deg 13.875 r_dihedral_angle_1_deg 5.83 r_scangle_it 4.522 r_mcangle_it 4.5 r_mcbond_it 3.816 r_scbond_it 3.252 r_angle_refined_deg 1.492 r_angle_other_deg 0.831 r_mcbond_other 0.701 r_symmetry_vdw_other 0.261 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.198 r_nbd_other 0.175 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.084 r_nbtor_other 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2144 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 28
Software Software Software Name Purpose JDirector data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling