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Crystal structure of MtmC in complex with SAM and TDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 295 0.1 M MES, pH 5.5, 0.2 M ammonium acetate, 16% PEG 4000, 1 mM TDP, 1 mM SAM, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.09 60.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.733 α = 90 b = 134.733 β = 90 c = 127.755 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 24771 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 40 24771 1408 99.43 0.2132 0.2117 0.2166 0.23841 0.2396 RANDOM 45.663
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.64 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.121 r_dihedral_angle_4_deg 15.075 r_dihedral_angle_3_deg 14.639 r_dihedral_angle_1_deg 5.481 r_long_range_B_refined 4.407 r_long_range_B_other 4.34 r_scangle_other 2.664 r_mcangle_it 2.196 r_mcangle_other 2.196 r_scbond_it 1.568
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.121 r_dihedral_angle_4_deg 15.075 r_dihedral_angle_3_deg 14.639 r_dihedral_angle_1_deg 5.481 r_long_range_B_refined 4.407 r_long_range_B_other 4.34 r_scangle_other 2.664 r_mcangle_it 2.196 r_mcangle_other 2.196 r_scbond_it 1.568 r_scbond_other 1.567 r_mcbond_it 1.332 r_mcbond_other 1.332 r_angle_refined_deg 1.077 r_angle_other_deg 0.742 r_chiral_restr 0.059 r_bond_other_d 0.006 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3231 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 57
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling