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Carp Fishelectin, holo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4RUQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1 M N-Acetyl glucosamine, 19% PEG 3350, 0.2 M magnesium formate, 0.05 M Tris/HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.79 55.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 204.41 α = 90 b = 120.81 β = 91.42 c = 69.27 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.071560 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.7 93.2 0.098 2.4 171485 171485 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 95.1 0.351
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4RUQ 1.7 29.67 1 162866 162866 8614 93.11 0.1955 0.1955 0.19453 0.1942 0.21372 0.2135 RANDOM 18.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.62 0.02 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.761 r_dihedral_angle_4_deg 20.275 r_dihedral_angle_3_deg 11.662 r_dihedral_angle_1_deg 5.828 r_long_range_B_refined 3.22 r_angle_refined_deg 1.151 r_mcangle_it 0.863 r_scbond_it 0.563 r_mcbond_it 0.481 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.761 r_dihedral_angle_4_deg 20.275 r_dihedral_angle_3_deg 11.662 r_dihedral_angle_1_deg 5.828 r_long_range_B_refined 3.22 r_angle_refined_deg 1.151 r_mcangle_it 0.863 r_scbond_it 0.563 r_mcbond_it 0.481 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10646 Nucleic Acid Atoms Solvent Atoms 783 Heterogen Atoms 345
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling