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Crystal Structure of the Pseudomonas phage phi297 tailspike gp61
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 17% Glycerol, 11% PEG 4000, 0.1M Hepes pH 7.0
15 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 291K 2 VAPOR DIFFUSION, HANGING DROP 7 291 12% PEG 4000, 0.2M Amm acetate, 0.1M Hepes pH 7.0
20 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 210.617 α = 90 b = 124.705 β = 97.93 c = 83.563 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 46.47 98.1 0.038 0.052 16.8 3.4 321302 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.6 94.8 0.3 0.384 3.8 3.3 45160
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.52 46.37 2 321302 305236 16066 98.04 0.08081 0.08081 0.07876 0.0788 0.11953 0.1192 RANDOM 18.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.05 0.06 -0.04
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 60.422 r_dihedral_angle_2_deg 33.595 r_sphericity_bonded 15.032 r_dihedral_angle_4_deg 14.705 r_dihedral_angle_3_deg 10.961 r_long_range_B_refined 7.928 r_long_range_B_other 7.928 r_dihedral_angle_1_deg 6.827 r_rigid_bond_restr 5.409 r_scangle_other 3.675
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 60.422 r_dihedral_angle_2_deg 33.595 r_sphericity_bonded 15.032 r_dihedral_angle_4_deg 14.705 r_dihedral_angle_3_deg 10.961 r_long_range_B_refined 7.928 r_long_range_B_other 7.928 r_dihedral_angle_1_deg 6.827 r_rigid_bond_restr 5.409 r_scangle_other 3.675 r_scbond_it 3.513 r_scbond_other 3.513 r_mcangle_it 2.589 r_mcangle_other 2.589 r_mcbond_it 2.3 r_mcbond_other 2.274 r_angle_refined_deg 1.784 r_angle_other_deg 1.391 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13474 Nucleic Acid Atoms Solvent Atoms 3133 Heterogen Atoms 96
Software Software Software Name Purpose RemDAq data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling