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Crystal structure of esterase A from Streptococcus pyogenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1 M HEPES, 20% PEG4000, 10% 2-propanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.93 57.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.98 α = 90 b = 103.98 β = 90 c = 133.631 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Toroidal Mirror 2005-09-24 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 Toroidal Mirror 2005-09-24 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD ADSC QUANTUM 210 Toroidal Mirror 2005-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.93937 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.93957 ESRF ID29 3 SYNCHROTRON ESRF BEAMLINE ID29 0.89844 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.75 15 99.8 0.081 10.4 37068 37068 13.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 1.75 1.81 99.9 0.496 3658
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 14.89 34036 32310 1724 99.46 0.15941 0.15941 0.15759 0.1699 0.19319 0.2013 RANDOM 14.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.779 r_dihedral_angle_4_deg 15.746 r_dihedral_angle_3_deg 14.807 r_dihedral_angle_1_deg 6.79 r_long_range_B_refined 6.317 r_long_range_B_other 5.957 r_scangle_other 3.809 r_mcangle_it 2.625 r_mcangle_other 2.624 r_scbond_other 2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.779 r_dihedral_angle_4_deg 15.746 r_dihedral_angle_3_deg 14.807 r_dihedral_angle_1_deg 6.79 r_long_range_B_refined 6.317 r_long_range_B_other 5.957 r_scangle_other 3.809 r_mcangle_it 2.625 r_mcangle_other 2.624 r_scbond_other 2.46 r_scbond_it 2.455 r_angle_refined_deg 2.107 r_mcbond_it 1.727 r_mcbond_other 1.726 r_angle_other_deg 1.008 r_chiral_restr 0.137 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 7
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling