☰ Navigation Tabs
Lactate Dehydrogenase in complex with inhibitor compound 47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 PEG3350, sodium malonate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.234 α = 90 b = 81.758 β = 98.28 c = 104.563 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 6M 2012-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 97.7 0.045 17.1 3.4 95334 93076 -3 31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 50 100710 91182 1894 92.42 0.21 0.19246 0.19157 0.1966 0.23341 0.233 RANDOM 34.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.41 1.12 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.267 r_dihedral_angle_4_deg 19.636 r_dihedral_angle_3_deg 12.491 r_long_range_B_refined 9.947 r_long_range_B_other 9.945 r_scangle_other 8.983 r_scbond_it 6.758 r_scbond_other 6.757 r_dihedral_angle_1_deg 5.531 r_mcangle_it 5.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.267 r_dihedral_angle_4_deg 19.636 r_dihedral_angle_3_deg 12.491 r_long_range_B_refined 9.947 r_long_range_B_other 9.945 r_scangle_other 8.983 r_scbond_it 6.758 r_scbond_other 6.757 r_dihedral_angle_1_deg 5.531 r_mcangle_it 5.174 r_mcangle_other 5.169 r_mcbond_other 4.085 r_mcbond_it 4.083 r_angle_refined_deg 1.275 r_angle_other_deg 0.765 r_chiral_restr 0.068 r_gen_planes_refined 0.015 r_gen_planes_other 0.012 r_bond_refined_d 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10162 Nucleic Acid Atoms Solvent Atoms 748 Heterogen Atoms 222
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling