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Wolinella succinogenes octaheme sulfite reductase MccA, form I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.25 298 12% PEG 5000 MME, 0.1M HEPES/NaOH, 5% tacsimate pH 7.0, 4mM Zwittergent 3-12, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.121 α = 90 b = 103.042 β = 98.46 c = 233.07 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M mirrors 2014-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.381 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 49.37 100 0.199 9.2 6.6 500807 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 49.37 500807 475210 24857 99.8 0.18546 0.18546 0.18365 0.22011 0.1906 RANDOM 39.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 1.45 -0.63 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.882 r_dihedral_angle_4_deg 15.005 r_dihedral_angle_3_deg 13.752 r_dihedral_angle_1_deg 5.809 r_long_range_B_refined 4.883 r_long_range_B_other 4.883 r_scangle_other 2.17 r_mcangle_it 2 r_mcangle_other 2 r_angle_refined_deg 1.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.882 r_dihedral_angle_4_deg 15.005 r_dihedral_angle_3_deg 13.752 r_dihedral_angle_1_deg 5.809 r_long_range_B_refined 4.883 r_long_range_B_other 4.883 r_scangle_other 2.17 r_mcangle_it 2 r_mcangle_other 2 r_angle_refined_deg 1.309 r_scbond_it 1.267 r_scbond_other 1.267 r_mcbond_it 1.181 r_mcbond_other 1.181 r_angle_other_deg 0.776 r_chiral_restr 0.092 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 62698 Nucleic Acid Atoms Solvent Atoms 2934 Heterogen Atoms 4382
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling