☰ Navigation Tabs
Crystal structure of UbiX, an aromatic acid decarboxylase from the Colwellia psychrerythraea 34H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.8 293 200 mM sodium chloride, 100 mM potassium phosphate monobasic/sodium phosphate dibasic, pH 5.8, 11% w/v PEG8000, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.204 α = 90 b = 141.908 β = 90 c = 170.069 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270r 2013-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.003 85.539 98.35 0.12 13.2 87139 85707 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.003 96.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.003 76.42 87130 79779 4216 96.37 0.20409 0.20168 0.211 0.25024 0.2561 RANDOM 28.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.753 r_dihedral_angle_4_deg 17.161 r_dihedral_angle_3_deg 15.296 r_long_range_B_refined 7.344 r_long_range_B_other 7.343 r_dihedral_angle_1_deg 6.07 r_scangle_other 4.824 r_mcangle_it 3.594 r_mcangle_other 3.594 r_scbond_other 3.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.753 r_dihedral_angle_4_deg 17.161 r_dihedral_angle_3_deg 15.296 r_long_range_B_refined 7.344 r_long_range_B_other 7.343 r_dihedral_angle_1_deg 6.07 r_scangle_other 4.824 r_mcangle_it 3.594 r_mcangle_other 3.594 r_scbond_other 3.174 r_scbond_it 3.169 r_mcbond_it 2.553 r_mcbond_other 2.552 r_angle_refined_deg 2.01 r_angle_other_deg 0.91 r_chiral_restr 0.115 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9258 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 216
Software Software Software Name Purpose REFMAC refinement