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Crystal structure of APC3-APC16 complex (Selenomethionine Derivative)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 0.1M MES, pH 6.2, 0.24M magnesium chloride, 6% PEG6000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.63 73.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.019 α = 90 b = 116.019 β = 90 c = 184.352 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 50 99.9 0.125 38356 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.39 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.25 49.94 38356 34309 1813 94.21 0.21166 0.20971 0.2125 0.24846 0.2462 RANDOM 80.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.14 2.14 -4.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.322 r_dihedral_angle_4_deg 19.625 r_dihedral_angle_3_deg 17.891 r_long_range_B_refined 8.11 r_long_range_B_other 8.11 r_dihedral_angle_1_deg 5.853 r_scangle_other 5.548 r_mcangle_it 4.899 r_mcangle_other 4.898 r_scbond_it 3.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.322 r_dihedral_angle_4_deg 19.625 r_dihedral_angle_3_deg 17.891 r_long_range_B_refined 8.11 r_long_range_B_other 8.11 r_dihedral_angle_1_deg 5.853 r_scangle_other 5.548 r_mcangle_it 4.899 r_mcangle_other 4.898 r_scbond_it 3.839 r_scbond_other 3.838 r_mcbond_it 2.931 r_mcbond_other 2.931 r_angle_refined_deg 1.067 r_angle_other_deg 0.788 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_bond_other_d 0.006 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7542 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XDS data scaling SHELX model building REFMAC refinement pointless data scaling SCALA data scaling SHELX phasing