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Methylmalonyl-COA Mutase substrate complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1REQ PDB ENTRY 1REQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.74 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.13 α = 90 b = 160.9 β = 104.64 c = 88.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE AREA DETECTOR MARRESEARCH MIRROR 1995-09-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.8 0.103 0.103 5.3 4.3 164181 3.5 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.379 0.379 1.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1REQ 2.2 20 164053 7570 99.9 0.232 0.222 0.2143 0.277 0.2555 RANDOM 38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.5 p_scbond_it 3.3 p_mcangle_it 3.2 p_mcbond_it 2.2 p_multtor_nbd 0.178 p_chiral_restr 0.147 p_singtor_nbd 0.129 p_xyhbond_nbd 0.125 p_planar_d 0.049 p_angle_d 0.043
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.5 p_scbond_it 3.3 p_mcangle_it 3.2 p_mcbond_it 2.2 p_multtor_nbd 0.178 p_chiral_restr 0.147 p_singtor_nbd 0.129 p_xyhbond_nbd 0.125 p_planar_d 0.049 p_angle_d 0.043 p_bond_d 0.012 p_plane_restr 0.004 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20586 Nucleic Acid Atoms Solvent Atoms 1286 Heterogen Atoms 462
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling