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Crystal structure of VmoLac bound to 3-oxo-C10 AHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 VmoLac was concentrated at 20mg/mL, 100 mM Tris, pH 8.5, 1.5 M ammonium sulphate, 12 % v/v glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.81 67.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.74 α = 90 b = 174.74 β = 90 c = 61.55 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.95373 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.75 99.8 72593 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 47.75 68963 3630 99.77 0.14047 0.13866 0.1512 0.17444 0.1836 RANDOM 24.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.897 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_3_deg 13.127 r_long_range_B_refined 8.451 r_long_range_B_other 8.45 r_dihedral_angle_1_deg 6.166 r_scangle_other 5.702 r_scbond_it 3.983 r_scbond_other 3.983 r_mcangle_it 2.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.897 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_3_deg 13.127 r_long_range_B_refined 8.451 r_long_range_B_other 8.45 r_dihedral_angle_1_deg 6.166 r_scangle_other 5.702 r_scbond_it 3.983 r_scbond_other 3.983 r_mcangle_it 2.705 r_mcangle_other 2.705 r_angle_refined_deg 2.039 r_mcbond_it 2.033 r_mcbond_other 2.032 r_angle_other_deg 1.085 r_chiral_restr 0.127 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4976 Nucleic Acid Atoms Solvent Atoms 659 Heterogen Atoms 130
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling