☰ Navigation Tabs
X-ray diffraction in temporally and spatially resolved biomolecular science: the X-ray crystal structure of hen egg white lysozyme cocrystallized with Ta6Br12 and then a crystal soaked in K2PtBr6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 4.5 293 NaCl; Ta6Br12 2mM. A crystal was soaked in K2PtBr6 10mM., pH 4.5, Batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.03 39.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.07 α = 90 b = 79.07 β = 90 c = 37.235 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APEX II CCD 2010-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Cu FINE FOCUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 25.02 99.97 0.049 6.8 24843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 22.36 12623 691 98.7 0.1826 0.18002 0.1938 0.23046 0.2379 RANDOM 19.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.156 r_dihedral_angle_4_deg 23.393 r_dihedral_angle_3_deg 13.931 r_long_range_B_refined 7.789 r_long_range_B_other 7.545 r_dihedral_angle_1_deg 6.553 r_scangle_other 4.974 r_scbond_it 3.965 r_mcangle_it 2.96 r_scbond_other 2.949
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.156 r_dihedral_angle_4_deg 23.393 r_dihedral_angle_3_deg 13.931 r_long_range_B_refined 7.789 r_long_range_B_other 7.545 r_dihedral_angle_1_deg 6.553 r_scangle_other 4.974 r_scbond_it 3.965 r_mcangle_it 2.96 r_scbond_other 2.949 r_mcangle_other 2.889 r_angle_refined_deg 2.229 r_mcbond_it 1.887 r_mcbond_other 1.83 r_angle_other_deg 1.046 r_chiral_restr 0.153 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 59
Software Software Software Name Purpose PHASER phasing REFMAC refinement SAINT data reduction