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Molecular Analysis of the PDZ4 Domain of Mouse PDZK1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 0.15M Potassium Bromide, 24% PEGMME 2000, 15% Ethylene glycol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.17 43.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.256 α = 90 b = 89.214 β = 113.41 c = 33.809 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 2014-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 100 89.9 3.6 22402 22402 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 51.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 44.61 20134 17532 930 98.61 0.18867 0.18689 0.198 0.2266 0.2393 RANDOM 38.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 0.26 -0.69 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.495 r_dihedral_angle_4_deg 23.019 r_dihedral_angle_3_deg 16.396 r_long_range_B_other 8.487 r_long_range_B_refined 8.442 r_dihedral_angle_1_deg 6.263 r_scangle_other 4.018 r_scbond_it 3.574 r_mcangle_it 3.293 r_mcangle_other 2.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.495 r_dihedral_angle_4_deg 23.019 r_dihedral_angle_3_deg 16.396 r_long_range_B_other 8.487 r_long_range_B_refined 8.442 r_dihedral_angle_1_deg 6.263 r_scangle_other 4.018 r_scbond_it 3.574 r_mcangle_it 3.293 r_mcangle_other 2.961 r_scbond_other 2.672 r_mcbond_it 2.296 r_mcbond_other 2.13 r_angle_refined_deg 1.713 r_angle_other_deg 0.847 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1262 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 20
Software Software Software Name Purpose CBASS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling