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Zebra fish cytochrome P450 17A2 with Abiraterone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.5% (w/v) tryptone, 25 mM sodium HEPES, and 10% (w/v) polyethylene glycol 3,350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 38.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.01 α = 90 b = 79.77 β = 92.73 c = 95.24 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate Si(111) 2013-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.00395 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 42.32 0.099 23.7 7.4 19692 19689 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.98 99.5 0.785 4.29 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.86 42.32 18674 1005 99.3 0.22728 0.22296 0.2229 0.30514 0.3041 RANDOM 88.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.99 -2.68 0.72 -4.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.705 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 19.048 r_long_range_B_refined 13.465 r_long_range_B_other 13.465 r_dihedral_angle_1_deg 7.909 r_scangle_other 6.678 r_mcangle_it 6.574 r_mcangle_other 6.573 r_scbond_it 4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.705 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 19.048 r_long_range_B_refined 13.465 r_long_range_B_other 13.465 r_dihedral_angle_1_deg 7.909 r_scangle_other 6.678 r_mcangle_it 6.574 r_mcangle_other 6.573 r_scbond_it 4.2 r_scbond_other 4.199 r_mcbond_it 4.12 r_mcbond_other 4.12 r_angle_refined_deg 1.675 r_angle_other_deg 0.891 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6398 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 143
Software Software Software Name Purpose MD2 data collection PHENIX model building REFMAC refinement xia2 data reduction XDS data reduction pointless data scaling Aimless data scaling PHENIX phasing