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Zebra fish cytochrome P450 17A1 with Abiraterone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 100 mM Imidazole, 1M Sodium Acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.68 66.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.63 α = 90 b = 136.63 β = 90 c = 135.441 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Si(III) 2013-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.734 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 29 99.89 0.111 56.2 21.7 22332 22308 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 100 0.451 11.86 22.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.3 29 20626 1682 99.78 0.17348 0.1684 0.1663 0.23824 0.2339 RANDOM 72.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.81 -0.9 -1.81 5.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.569 r_dihedral_angle_3_deg 20.821 r_dihedral_angle_4_deg 18.425 r_long_range_B_refined 9.091 r_long_range_B_other 9.087 r_dihedral_angle_1_deg 8.149 r_scangle_other 5.977 r_mcangle_other 5.379 r_mcangle_it 5.1 r_scbond_other 3.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.569 r_dihedral_angle_3_deg 20.821 r_dihedral_angle_4_deg 18.425 r_long_range_B_refined 9.091 r_long_range_B_other 9.087 r_dihedral_angle_1_deg 8.149 r_scangle_other 5.977 r_mcangle_other 5.379 r_mcangle_it 5.1 r_scbond_other 3.588 r_scbond_it 3.409 r_mcbond_it 3.13 r_mcbond_other 3.128 r_angle_refined_deg 1.742 r_angle_other_deg 0.874 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6555 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 138
Software Software Software Name Purpose MD2 data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing