☰ Navigation Tabs
yCP beta5-M45T mutant in complex with carfilzomib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RYP pdb entry 1RYP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 20 MM MGAC2, 13% MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 3.67 66.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.63 α = 90 b = 300.13 β = 113.11 c = 145.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 96.8 0.086 11.5 293794 284293 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 97.8 0.472 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1RYP 2.7 15 285293 270078 14215 96.88 0.20602 0.20495 0.21 0.22618 0.2313 RANDOM 58.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 -0.71 -5.57 2.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.829 r_sphericity_free 27.666 r_sphericity_bonded 18.109 r_dihedral_angle_3_deg 13.91 r_dihedral_angle_4_deg 13.646 r_dihedral_angle_1_deg 5.009 r_long_range_B_refined 3.301 r_long_range_B_other 3.286 r_mcangle_it 2.899 r_mcangle_other 2.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.829 r_sphericity_free 27.666 r_sphericity_bonded 18.109 r_dihedral_angle_3_deg 13.91 r_dihedral_angle_4_deg 13.646 r_dihedral_angle_1_deg 5.009 r_long_range_B_refined 3.301 r_long_range_B_other 3.286 r_mcangle_it 2.899 r_mcangle_other 2.899 r_scangle_other 2.546 r_mcbond_it 2.194 r_mcbond_other 2.194 r_scbond_it 2.084 r_scbond_other 2.084 r_rigid_bond_restr 1.155 r_angle_refined_deg 0.873 r_angle_other_deg 0.772 r_chiral_restr 0.049 r_bond_refined_d 0.005 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49293 Nucleic Acid Atoms Solvent Atoms 576 Heterogen Atoms 371
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing