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yCP beta5-A49T-A50V-double mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RYP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 20 MM MGAC2, 13% MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 3.67 66.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.8 α = 90 b = 300.21 β = 112.86 c = 144.4 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 30 97.9 0.111 7.7 191054 187042 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.2 99.2 0.495 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1RYP 3.1 15 187042 177689 9353 98.06 0.16125 0.15936 0.19654 0.1991 RANDOM 76.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.08 -1.16 -7.85 3.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.897 r_sphericity_free 32.095 r_sphericity_bonded 19.691 r_dihedral_angle_3_deg 13.809 r_dihedral_angle_4_deg 13.046 r_long_range_B_refined 5.236 r_long_range_B_other 5.231 r_dihedral_angle_1_deg 5.186 r_mcangle_it 4.57 r_mcangle_other 4.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.897 r_sphericity_free 32.095 r_sphericity_bonded 19.691 r_dihedral_angle_3_deg 13.809 r_dihedral_angle_4_deg 13.046 r_long_range_B_refined 5.236 r_long_range_B_other 5.231 r_dihedral_angle_1_deg 5.186 r_mcangle_it 4.57 r_mcangle_other 4.57 r_scangle_other 4.229 r_mcbond_it 3.386 r_mcbond_other 3.386 r_scbond_it 3.318 r_scbond_other 3.318 r_rigid_bond_restr 1.125 r_angle_refined_deg 0.838 r_angle_other_deg 0.676 r_chiral_restr 0.048 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49374 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 8
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing