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Structure of human haspin (GSG2) in complex with SCH772984 revealing the first type-I binding mode
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DLZ pdb entry 3DLZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277.15 51% MPD and 0.1 M SPG pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 3.06 59.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.89 α = 90 b = 78.36 β = 90 c = 81.75 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M Kirkpatrick Baez bimorph mirror pair 2013-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 36.24 100 0.044 17.9 6.1 99002 98923 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 100 0.693 2.4 6.3 14277
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3DLZ 1.4 36.19 2 98923 93986 4936 99.98 0.14991 0.14915 0.1488 0.1642 0.164 RANDOM 26.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.19 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_4_deg 21.87 r_dihedral_angle_3_deg 12.316 r_long_range_B_other 7.723 r_long_range_B_refined 7.719 r_dihedral_angle_1_deg 6.559 r_scangle_other 3.777 r_scbond_it 2.439 r_scbond_other 2.439 r_mcangle_other 2.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_4_deg 21.87 r_dihedral_angle_3_deg 12.316 r_long_range_B_other 7.723 r_long_range_B_refined 7.719 r_dihedral_angle_1_deg 6.559 r_scangle_other 3.777 r_scbond_it 2.439 r_scbond_other 2.439 r_mcangle_other 2.319 r_mcangle_it 2.316 r_angle_refined_deg 1.61 r_mcbond_it 1.473 r_mcbond_other 1.46 r_angle_other_deg 0.772 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2637 Nucleic Acid Atoms Solvent Atoms 500 Heterogen Atoms 64
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling