☰ Navigation Tabs
Crystal structure of sugar transporter atu4361 from agrobacterium fabrum c58, target efi-510558, with bound maltotriose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 PROTEIN: 10 MM BIS-TRIS, 500 MM NACL, 10% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100 RATIO); RESERVOIR: 0.1 M SODIUM ACETATE, PH 4.5, 20% PEG3350; CRYOPROTECTION: RESERVOIR; VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.07 40.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.554 α = 90 b = 77.064 β = 93.22 c = 66.143 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M MIRRORS 2014-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.34 50 98.7 0.037 0.037 27.5 7.3 80995 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.34 1.36 100 0.191 0.171 6.4 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.34 50 78521 2446 99.08 0.11245 0.11136 0.1278 0.14704 0.1631 RANDOM 17.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.52 -0.46 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_sphericity_free 21.445 r_dihedral_angle_4_deg 17.34 r_dihedral_angle_3_deg 12.478 r_sphericity_bonded 11.29 r_scangle_other 6.019 r_dihedral_angle_1_deg 5.833 r_rigid_bond_restr 5.676 r_scbond_other 5.49 r_scbond_it 5.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_sphericity_free 21.445 r_dihedral_angle_4_deg 17.34 r_dihedral_angle_3_deg 12.478 r_sphericity_bonded 11.29 r_scangle_other 6.019 r_dihedral_angle_1_deg 5.833 r_rigid_bond_restr 5.676 r_scbond_other 5.49 r_scbond_it 5.489 r_long_range_B_other 5.374 r_long_range_B_refined 5.373 r_mcangle_it 1.972 r_mcangle_other 1.972 r_angle_refined_deg 1.8 r_mcbond_it 1.79 r_mcbond_other 1.787 r_angle_other_deg 1.113 r_chiral_restr 0.215 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2976 Nucleic Acid Atoms Solvent Atoms 516 Heterogen Atoms 34
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing