X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52961.6 M Sodium citrate pH 6.5 5 mM Xylohexaose 30 mg/mL, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
2.8256.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.869α = 90
b = 57.049β = 90
c = 85.383γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2013-10-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G0.97857APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.14457.0691000.06416.27.86585965859
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.1141.14899.80.7476.4652

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.1447.446255862558322399.90.161160.161160.160270.17827RANDOM16.114
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.160.53-0.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg47.712
r_dihedral_angle_3_deg11.792
r_long_range_B_refined8.666
r_long_range_B_other7.763
r_dihedral_angle_1_deg7.495
r_dihedral_angle_4_deg6.66
r_scangle_other4.873
r_scbond_it3.372
r_scbond_other3.363
r_angle_refined_deg2.361
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg47.712
r_dihedral_angle_3_deg11.792
r_long_range_B_refined8.666
r_long_range_B_other7.763
r_dihedral_angle_1_deg7.495
r_dihedral_angle_4_deg6.66
r_scangle_other4.873
r_scbond_it3.372
r_scbond_other3.363
r_angle_refined_deg2.361
r_mcangle_other1.805
r_mcangle_it1.788
r_mcbond_it1.268
r_mcbond_other1.218
r_angle_other_deg0.965
r_chiral_restr0.152
r_bond_refined_d0.031
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1122
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms28

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
autoPROCdata scaling