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Crystal structure of a putative hydrolase from Burkholderia cenocepacia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 289 BuceA.00077.a.B1.PW37289 at 20.8 mg/mL against JCSG+ screen condition B1, 0.1 M Na citrate pH 4.0, 0.8 M ammonium sulfate cryo-protected with 20% ethylene glycol, crystal tracking ID 246960b1, unique puck ID rhw0-1, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.37 48.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.64 α = 90 b = 110.55 β = 106.61 c = 116.16 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 99.1 0.146 10.06 5 65624 65019 -3 28.273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 99 0.555 3.14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 50 65019 3174 99.15 0.21 0.208 0.2127 0.2492 0.253 RANDOM 23.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.4 -0.62 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.839 r_dihedral_angle_3_deg 13.445 r_dihedral_angle_4_deg 13.431 r_dihedral_angle_1_deg 6.177 r_mcangle_it 1.59 r_angle_refined_deg 1.316 r_angle_other_deg 0.964 r_mcbond_it 0.907 r_mcbond_other 0.906 r_chiral_restr 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.839 r_dihedral_angle_3_deg 13.445 r_dihedral_angle_4_deg 13.431 r_dihedral_angle_1_deg 6.177 r_mcangle_it 1.59 r_angle_refined_deg 1.316 r_angle_other_deg 0.964 r_mcbond_it 0.907 r_mcbond_other 0.906 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12686 Nucleic Acid Atoms Solvent Atoms 606 Heterogen Atoms 45
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction