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Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCIA) at high resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 1 uL 1 mM d(TCGGCGCCIA)2 + 1 uL 4 mM rac-Ru(TAP)2(dppz).2Cl + 6uL 40 mM sodium cacodylate, 12 mM spermine, 10% MPD, 20 mM barium chloride, 80 mM potassium chloride equilibrated against 1 mL 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.91 57.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.16 α = 90 b = 42.16 β = 90 c = 39.65 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.82565 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.95 23.828 99.5 22994 22994 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.95 0.97 98.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PDB ENTRY 3QRN THROUGHOUT 0.95 23.828 21791 21791 1179 99.29 0.09655 0.09538 0.0973 0.11928 0.1199 RANDOM 15.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.52
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 20.959 r_sphericity_bonded 15.046 r_rigid_bond_restr 9.069 r_long_range_B_refined 4.599 r_long_range_B_other 3.833 r_scangle_other 3.555 r_angle_refined_deg 3.084 r_scbond_it 2.583 r_scbond_other 2.579 r_angle_other_deg 1.57
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 20.959 r_sphericity_bonded 15.046 r_rigid_bond_restr 9.069 r_long_range_B_refined 4.599 r_long_range_B_other 3.833 r_scangle_other 3.555 r_angle_refined_deg 3.084 r_scbond_it 2.583 r_scbond_other 2.579 r_angle_other_deg 1.57 r_chiral_restr 0.096 r_gen_planes_refined 0.039 r_bond_refined_d 0.021 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 201 Solvent Atoms 80 Heterogen Atoms 53
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling