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Crystal Structure of an Enoyl-CoA hydratase from Mycobacterium smegmatis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 40% reagent alcohol, 0.1M sodium phosphate dibasic/ citric acid, pH=4.2, 5% PEG-1000, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.1 41.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.29 α = 84.96 b = 86.58 β = 73.62 c = 106.16 γ = 83.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 .9795 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 96.2 0.064 10.42 193399 186042 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 95.9 0.394 2.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 46.316 195289 176795 9247 96.25 0.19864 0.19733 0.22343 0.2203 RANDOM 23.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 -0.07 0.1 0.03 -0.06 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.245 r_dihedral_angle_4_deg 18.915 r_dihedral_angle_3_deg 11.943 r_dihedral_angle_1_deg 5.52 r_mcangle_it 1.533 r_angle_other_deg 1.522 r_scbond_it 1.479 r_angle_refined_deg 1.443 r_mcbond_it 0.964 r_mcbond_other 0.964
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.245 r_dihedral_angle_4_deg 18.915 r_dihedral_angle_3_deg 11.943 r_dihedral_angle_1_deg 5.52 r_mcangle_it 1.533 r_angle_other_deg 1.522 r_scbond_it 1.479 r_angle_refined_deg 1.443 r_mcbond_it 0.964 r_mcbond_other 0.964 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_bond_other_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19774 Nucleic Acid Atoms Solvent Atoms 1475 Heterogen Atoms 158
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction ALS data collection BALBES phasing