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Crystal structure of 3-ketosteroid-9-alpha-hydroxylase 5 (KshA5) from R. rhodochrous in complex with 1,4-30Q-CoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 294 0.5 M NaH2PO4, 0.125 M K2HPO4, 4% PEG-1000, 20 mM Tris, 0.1 mM phosphate-citrate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 4.09 69.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.17 α = 90 b = 163.17 β = 90 c = 47.14 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE mirrors 2012-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 0.98 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 141.309 100 0.244 7.1 6.7 22485 22485
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.013 1.278 0.6 6.2 3248
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 53.41 22477 1117 99.97 0.2265 0.2249 0.256 0.2353 RANDOM 50.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 18.07 18.07 -36.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.756 r_dihedral_angle_3_deg 15.095 r_dihedral_angle_4_deg 9.996 r_dihedral_angle_1_deg 6.173 r_mcangle_it 3.99 r_angle_other_deg 3.643 r_mcbond_it 2.629 r_mcbond_other 2.617 r_angle_refined_deg 0.966 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.756 r_dihedral_angle_3_deg 15.095 r_dihedral_angle_4_deg 9.996 r_dihedral_angle_1_deg 6.173 r_mcangle_it 3.99 r_angle_other_deg 3.643 r_mcbond_it 2.629 r_mcbond_other 2.617 r_angle_refined_deg 0.966 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_other 0.005 r_gen_planes_refined 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2959 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 37
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MxDC data collection MOSFLM data reduction