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PDGF-B blocking antibody bound to PDGF-BB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 18 C from a solution containing 22% PEG 3350 and 0.1M Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.48 50.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.15 α = 90 b = 68.47 β = 97.56 c = 95.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 PIXEL PSI PILATUS 6M 2012-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 69.64 99.7 51112 51112 1 62.06
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 69.64 51112 51112 2612 99.4 0.213 0.2112 0.2237 0.2475 0.2544 RANDOM 5% 65.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.104 -8.8531 -9.4643 3.3603
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 17.93 t_gen_planes 5 t_chiral_improper_torsion 5 t_ideal_dist_contact 4 t_omega_torsion 3.08 c_dihedral_angle_d 2 t_trig_c_planes 2 t_angle_deg 1.19 t_bond_d 0.009 c_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7759 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing BUSTER refinement autoPROC data scaling SCALA data scaling