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Crystal structure of HRASLS3/LRAT chimeric protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DOT PDB ENTRY 4DOT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 0.1 M Tris/HCl, pH 8.5, 0.2 M NaCl, 20% (w/v) polyethylene glycol 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.32 46.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.123 α = 90 b = 63.123 β = 90 c = 157.965 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL DECTRIS PILATUS 6M-F 2013-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9795 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 49.32 98.5 16836 16797 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4DOT 2.2 49.32 16836 16774 840 0.20922 0.20922 0.20711 0.2126 0.24767 0.2502 RANDOM 63.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.27 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.695 r_dihedral_angle_4_deg 17.145 r_dihedral_angle_3_deg 15.919 r_long_range_B_other 8.163 r_long_range_B_refined 8.162 r_dihedral_angle_1_deg 7.144 r_scangle_other 5.528 r_mcangle_other 4.367 r_mcangle_it 4.366 r_scbond_it 3.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.695 r_dihedral_angle_4_deg 17.145 r_dihedral_angle_3_deg 15.919 r_long_range_B_other 8.163 r_long_range_B_refined 8.162 r_dihedral_angle_1_deg 7.144 r_scangle_other 5.528 r_mcangle_other 4.367 r_mcangle_it 4.366 r_scbond_it 3.705 r_scbond_other 3.705 r_mcbond_it 2.977 r_mcbond_other 2.976 r_angle_refined_deg 1.676 r_angle_other_deg 1.111 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2167 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 16
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction