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Crystal structure of Coxsackievirus A24v soaked with Disialyllacto-N-tetraose (DSLNT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 200 mM Magnesium chloride, 3.4 M 1,6-Hexanediol, 100 mM HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 304.479 α = 90 b = 365.298 β = 90 c = 366.488 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976300 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 49.78 95.4 1626655 1552490 -3 -3
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.88 49.78 1626655 1552477 95.44 0.15652 0.15652 0.1762 24.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.46 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 15.351 r_dihedral_angle_3_deg 11.519 r_dihedral_angle_1_deg 7.905 r_long_range_B_refined 5.611 r_long_range_B_other 5.219 r_scangle_other 3.755 r_scbond_other 2.611 r_scbond_it 2.577 r_mcangle_other 2.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 15.351 r_dihedral_angle_3_deg 11.519 r_dihedral_angle_1_deg 7.905 r_long_range_B_refined 5.611 r_long_range_B_other 5.219 r_scangle_other 3.755 r_scbond_other 2.611 r_scbond_it 2.577 r_mcangle_other 2.091 r_mcangle_it 2.057 r_mcbond_it 1.638 r_mcbond_other 1.636 r_angle_refined_deg 1.178 r_angle_other_deg 0.73 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6523 Nucleic Acid Atoms Solvent Atoms 793 Heterogen Atoms 56
Software Software Software Name Purpose ISPyB data collection PYMOL model building REFMAC refinement XDS data reduction XSCALE data scaling PYMOL phasing