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Crystal structure of Coxsackievirus A24v soaked with 6'-Sialyllactose (6SL)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 200 mM Magnesium chloride, 3.4 M 1,6-Hexanediol, 100 mM HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 306.398 α = 90 b = 366.096 β = 90 c = 367.7 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976300 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.2 2434133 2413465 -3 -3
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.65 49.95 2434133 2413462 99.15 0.14879 0.14879 0.1655 24.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.19 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.95 r_dihedral_angle_4_deg 15.417 r_dihedral_angle_3_deg 11.139 r_dihedral_angle_1_deg 7.803 r_long_range_B_refined 4.607 r_long_range_B_other 4.29 r_scangle_other 3.082 r_scbond_other 2.114 r_scbond_it 2.113 r_mcangle_other 1.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.95 r_dihedral_angle_4_deg 15.417 r_dihedral_angle_3_deg 11.139 r_dihedral_angle_1_deg 7.803 r_long_range_B_refined 4.607 r_long_range_B_other 4.29 r_scangle_other 3.082 r_scbond_other 2.114 r_scbond_it 2.113 r_mcangle_other 1.762 r_mcangle_it 1.759 r_mcbond_it 1.278 r_mcbond_other 1.277 r_angle_refined_deg 1.157 r_angle_other_deg 0.721 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6509 Nucleic Acid Atoms Solvent Atoms 782 Heterogen Atoms 48
Software Software Software Name Purpose ISPyB data collection PYMOL model building REFMAC refinement XDS data reduction XSCALE data scaling PYMOL phasing