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Crystal structure of Coxsackievirus A24v
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 277 20mM Calcium chloride, 100mM Sodium acetate, 30% (w/v) MPD, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 303.259 α = 90 b = 303.259 β = 90 c = 763.592 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 99.26 92.7 826150 -3
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.9 99.26 891206 826125 92.7 0.189 0.189 49.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.11 0.23 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.135 r_dihedral_angle_3_deg 13.565 r_dihedral_angle_4_deg 13.255 r_dihedral_angle_1_deg 7.147 r_long_range_B_refined 6.256 r_long_range_B_other 6.256 r_scangle_other 5.022 r_mcangle_other 4.309 r_mcangle_it 4.263 r_scbond_other 3.439
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.135 r_dihedral_angle_3_deg 13.565 r_dihedral_angle_4_deg 13.255 r_dihedral_angle_1_deg 7.147 r_long_range_B_refined 6.256 r_long_range_B_other 6.256 r_scangle_other 5.022 r_mcangle_other 4.309 r_mcangle_it 4.263 r_scbond_other 3.439 r_scbond_it 3.408 r_mcbond_it 2.789 r_mcbond_other 2.789 r_angle_refined_deg 1.064 r_angle_other_deg 0.708 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6549 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose ISPyB data collection PYMOL model building REFMAC refinement XDS data reduction XSCALE data scaling PYMOL phasing