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Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at E444
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 8 mg mL-1 protein concentration and 2.0 M sodium formate in 0.1 M sodium acetate trihydrate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.711 α = 90 b = 65.27 β = 90 c = 68.195 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2013-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 30 98.5 21180 20862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.66 77.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.63 15 19279 1047 96.32 0.13796 0.13549 0.1357 0.18678 0.1864 RANDOM 14.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.27 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.904 r_dihedral_angle_3_deg 12.274 r_dihedral_angle_4_deg 10.249 r_dihedral_angle_1_deg 6.332 r_scangle_it 5.003 r_scbond_it 3.151 r_mcangle_it 2.044 r_angle_refined_deg 2.04 r_mcbond_it 1.289 r_chiral_restr 0.287
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.904 r_dihedral_angle_3_deg 12.274 r_dihedral_angle_4_deg 10.249 r_dihedral_angle_1_deg 6.332 r_scangle_it 5.003 r_scbond_it 3.151 r_mcangle_it 2.044 r_angle_refined_deg 2.04 r_mcbond_it 1.289 r_chiral_restr 0.287 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1539 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement