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Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at C383
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 5 and 8 mg mL-1 protein concentration, respectively, and 8% (v/v) 2-Propanol, 16% (w/v) PEG4000 in 60 mM Sodium citrate trihydrate buffer, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.757 α = 90 b = 65.505 β = 90 c = 67.978 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9343 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.97 30 97797 97211
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.97 1 99.9
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 0.97 10.54 93643 96.4 0.12627 0.12627 0.1347 0.17462 7.752
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.03 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.036 r_dihedral_angle_4_deg 13.169 r_sphericity_free 12.174 r_dihedral_angle_3_deg 11.275 r_dihedral_angle_1_deg 6.387 r_scangle_it 6.267 r_scbond_it 4.421 r_sphericity_bonded 4.098 r_mcangle_it 2.735 r_angle_refined_deg 2.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.036 r_dihedral_angle_4_deg 13.169 r_sphericity_free 12.174 r_dihedral_angle_3_deg 11.275 r_dihedral_angle_1_deg 6.387 r_scangle_it 6.267 r_scbond_it 4.421 r_sphericity_bonded 4.098 r_mcangle_it 2.735 r_angle_refined_deg 2.174 r_rigid_bond_restr 2.033 r_mcbond_it 1.806 r_angle_other_deg 1.046 r_mcbond_other 0.846 r_chiral_restr 0.127 r_bond_refined_d 0.028 r_gen_planes_refined 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1533 Nucleic Acid Atoms Solvent Atoms 395 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement