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Crystal structure of Fab 3.1 in complex with the 1918 influenza virus hemagglutinin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 15% PEG3350, 0.1 M magnesium sulfate, 100 mM Tris-HCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.9 68.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.06 α = 90 b = 135.06 β = 90 c = 230.201 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2011-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97549 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 42.841 99.6 34347 34347 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.95 96.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.91 42.841 34345 32610 1735 99.58 0.19551 0.19302 0.1879 0.24186 0.2347 RANDOM 90.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.39 -1.2 -2.39 3.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.494 r_dihedral_angle_3_deg 20.665 r_dihedral_angle_4_deg 18.904 r_dihedral_angle_1_deg 6.744 r_scangle_it 2.658 r_scbond_it 1.486 r_angle_refined_deg 1.484 r_mcangle_it 0.948 r_angle_other_deg 0.478 r_mcbond_it 0.477
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.494 r_dihedral_angle_3_deg 20.665 r_dihedral_angle_4_deg 18.904 r_dihedral_angle_1_deg 6.744 r_scangle_it 2.658 r_scbond_it 1.486 r_angle_refined_deg 1.484 r_mcangle_it 0.948 r_angle_other_deg 0.478 r_mcbond_it 0.477 r_chiral_restr 0.101 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7147 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 70
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling