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Crystal structure of Active WNK1 kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FPQ pdb entry 3FPQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 289 0.35M potassium phosphate, 19% PEG 3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.92 35.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.737 α = 90 b = 64.226 β = 92 c = 42.082 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r mirrors 2010-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 35.18 99.4 0.05 0.05 30.5 3.7 75996 19568 2 2 30.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3FPQ 1.84 35.18 2 2 75996 19568 1054 98.99 0.23114 0.22881 0.27363 0.2853 RANDOM 48.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.839 r_dihedral_angle_3_deg 14.513 r_dihedral_angle_4_deg 14.003 r_long_range_B_refined 8.33 r_long_range_B_other 8.009 r_dihedral_angle_1_deg 6.541 r_scangle_other 2.882 r_mcangle_it 2.763 r_mcangle_other 2.762 r_scbond_it 1.755
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.839 r_dihedral_angle_3_deg 14.513 r_dihedral_angle_4_deg 14.003 r_long_range_B_refined 8.33 r_long_range_B_other 8.009 r_dihedral_angle_1_deg 6.541 r_scangle_other 2.882 r_mcangle_it 2.763 r_mcangle_other 2.762 r_scbond_it 1.755 r_scbond_other 1.74 r_mcbond_it 1.724 r_mcbond_other 1.723 r_angle_refined_deg 1.452 r_angle_other_deg 0.809 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1976 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 5
Software Software Software Name Purpose HKL-2000 data collection CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing