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Alpha/beta hydrolase fold protein from Chitinophaga pinensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 297 3 M NaCl, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 3.26 62.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.38 α = 90 b = 110.38 β = 90 c = 59.184 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 37.2 99.9 0.08 12.5 5.1 133991 133991 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.51 99.9 0.621 1.86 3.7 6677
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.48 37.2 68260 68260 3453 99.83 0.105 0.1035 0.1099 0.1333 0.1364 RANDOM 22.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.1
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.297 r_dihedral_angle_2_deg 33.083 r_dihedral_angle_4_deg 20.933 r_dihedral_angle_3_deg 12.44 r_sphericity_bonded 9.72 r_dihedral_angle_1_deg 6.139 r_rigid_bond_restr 3.798 r_mcangle_it 1.845 r_mcbond_it 1.802 r_mcbond_other 1.801
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.297 r_dihedral_angle_2_deg 33.083 r_dihedral_angle_4_deg 20.933 r_dihedral_angle_3_deg 12.44 r_sphericity_bonded 9.72 r_dihedral_angle_1_deg 6.139 r_rigid_bond_restr 3.798 r_mcangle_it 1.845 r_mcbond_it 1.802 r_mcbond_other 1.801 r_angle_refined_deg 1.662 r_angle_other_deg 0.898 r_chiral_restr 0.113 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2170 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing