X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629325%(w/v) PEG 3350, 0.1M Sodium Acetate trihydrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.550.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.811α = 90
b = 51.966β = 122.81
c = 98.997γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X120.9796, 0.9894, 0.9537EMBL/DESY, HAMBURGX12

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.475098.78697885761
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.471.5287.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.4714.827588475884398893.850.152540.152540.149840.20405RANDOM21.122
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.09-0.070.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.429
r_dihedral_angle_4_deg20.428
r_dihedral_angle_3_deg12.632
r_sphericity_free11.335
r_sphericity_bonded6.865
r_scangle_it6.638
r_dihedral_angle_1_deg5.918
r_scbond_it4.714
r_mcangle_it3.307
r_rigid_bond_restr2.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.429
r_dihedral_angle_4_deg20.428
r_dihedral_angle_3_deg12.632
r_sphericity_free11.335
r_sphericity_bonded6.865
r_scangle_it6.638
r_dihedral_angle_1_deg5.918
r_scbond_it4.714
r_mcangle_it3.307
r_rigid_bond_restr2.77
r_mcbond_it2.367
r_angle_refined_deg1.987
r_chiral_restr0.164
r_bond_refined_d0.026
r_gen_planes_refined0.012
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3549
Nucleic Acid Atoms
Solvent Atoms807
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling