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Crystal structure of murine NK cell ligand RAE-1 beta in complex with NKG2D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 30% PEG8000, 0.300M AS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.53 51.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.637 α = 90 b = 58.637 β = 90 c = 350.33 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9793 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.77 91.48 49287 45094 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 48.77 2 49287 42805 2285 91.46 0.1918 0.19049 0.1963 0.2172 0.2238 RANDOM 48.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.4 0.79 -2.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.126 r_dihedral_angle_3_deg 13.095 r_dihedral_angle_4_deg 8.261 r_dihedral_angle_1_deg 5.761 r_long_range_B_refined 5.104 r_long_range_B_other 5.051 r_scangle_other 2.204 r_mcangle_it 2.181 r_mcangle_other 2.18 r_scbond_it 1.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.126 r_dihedral_angle_3_deg 13.095 r_dihedral_angle_4_deg 8.261 r_dihedral_angle_1_deg 5.761 r_long_range_B_refined 5.104 r_long_range_B_other 5.051 r_scangle_other 2.204 r_mcangle_it 2.181 r_mcangle_other 2.18 r_scbond_it 1.361 r_scbond_other 1.359 r_mcbond_it 1.291 r_mcbond_other 1.291 r_angle_refined_deg 1.15 r_angle_other_deg 0.93 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4335 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 6
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling