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E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH INHIBITOR 7-METHOXY-2-METHYLEN-3,4-DIHYDRONAPHTHALEN-1(2H)-ONE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.1 293 PEG 4000, COBALT CHLORIDE, HEPES,
METHIONINE, SODIUM CHLORIDE, POTASSIUM CHLORIDE, PH 7.1
Crystal Properties Matthews coefficient Solvent content 1.99 38.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.01 α = 90 b = 66.82 β = 111.15 c = 48.45 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MONTEL MIRRORS 2008-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 30 92.1 0.025 31.09 3.2 61073 17.883
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.6 84.6 0.113 10.67 3.01
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.54 19.69 29747 1566 91.97 0.13373 0.13205 0.1318 0.16533 0.1644 RANDOM 12.864
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.41 0.78 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.656 r_dihedral_angle_4_deg 18.428 r_dihedral_angle_3_deg 11.565 r_long_range_B_refined 6.782 r_dihedral_angle_1_deg 6.397 r_long_range_B_other 6.34 r_scangle_other 3.81 r_scbond_it 2.511 r_scbond_other 2.51 r_angle_refined_deg 2.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.656 r_dihedral_angle_4_deg 18.428 r_dihedral_angle_3_deg 11.565 r_long_range_B_refined 6.782 r_dihedral_angle_1_deg 6.397 r_long_range_B_other 6.34 r_scangle_other 3.81 r_scbond_it 2.511 r_scbond_other 2.51 r_angle_refined_deg 2.272 r_mcangle_other 1.983 r_mcangle_it 1.955 r_mcbond_it 1.3 r_mcbond_other 1.21 r_angle_other_deg 0.963 r_chiral_restr 0.129 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 475 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection XDS data scaling XSCALE data scaling Coot model building HKL2Map model building SHELXCD phasing ARP/wARP model building