Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
a number of search probes were generated by comparative modelling with the Rosetta suite [Das, R. & Baker, D. Macromolecular modeling with rosetta (2008) Annu Rev Biochem 77, 363-82], using PDB ID 3h47 as a template. In this way, 10000 models were obtained, scored and clustered. Several top ranking models gave solutions in MR using the program Phaser. To note, using PDB 3H47 (or any other available PDB with similar sequence) did not produce right solutions.
Crystallization
Crystalization Experiments
ID
Method
pH
Temperature
Details
1
VAPOR DIFFUSION, HANGING DROP
8.5
293
0.1M Tris.HCl, 1.25M Ammonium sulphate
Crystal Properties
Matthews coefficient
Solvent content
1.92
35.8
Crystal Data
Unit Cell
Length ( Å )
Angle ( ˚ )
a = 47.707
α = 90
b = 52.877
β = 90
c = 90.873
γ = 90
Symmetry
Space Group
P 21 21 21
Diffraction
Diffraction Experiment
ID #
Crystal ID
Scattering Type
Data Collection Temperature
Detector
Detector Type
Details
Collection Date
Monochromator
Protocol
1
1
x-ray
100
IMAGE PLATE
MAR scanner 345 mm plate
2012-12-20
M
SINGLE WAVELENGTH
Radiation Source
ID #
Source
Type
Wavelength List
Synchrotron Site
Beamline
1
ROTATING ANODE
RIGAKU MICROMAX-007 HF
1.5418
Data Collection
Overall
ID #
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Sym I (Observed)
Rrim I (All)
Rpim I (All)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1
2.457
45.703
98.9
0.109
0.129
0.067
10.2
3.5
8737
8737
36.1
Highest Resolution Shell
ID #
Resolution (High)
Resolution (Low)
Percent Possible (All)
Percent Possible (Observed)
R Merge I (Observed)
R-Sym I (Observed)
Rpim I (All)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1
2.457
2.59
96.3
0.378
0.378
0.232
2
3.5
1194
Refinement
Statistics
Diffraction ID
Structure Solution Method
Cross Validation method
Starting model
Resolution (High)
Resolution (Low)
Number Reflections (Observed)
Number Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (Observed)
R-Work (Depositor)
R-Work (DCC)
R-Free (Depositor)
R-Free (DCC)
R-Free Selection Details
Mean Isotropic B
X-RAY DIFFRACTION
MOLECULAR REPLACEMENT
THROUGHOUT
a number of search probes were generated by comparative modelling with the Rosetta suite [Das, R. & Baker, D. Macromolecular modeling with rosetta (2008) Annu Rev Biochem 77, 363-82], using PDB ID 3h47 as a template. In this way, 10000 models were obtained, scored and clustered. Several top ranking models gave solutions in MR using the program Phaser. To note, using PDB 3H47 (or any other available PDB with similar sequence) did not produce right solutions.