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Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue GltPh
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KBC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 PEG 400, Potassium Citrate, Potassium Chloride, Magnesium Chloride
Crystal Properties Matthews coefficient Solvent content 4.28 71.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.83 α = 90 b = 200.434 β = 90 c = 206.397 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 100 65.3 7.9 3.4 23932
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4 4.14 6.5 0.752 1.3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3KBC 4.08 15 11105 1222 67.39 0.26214 0.25841 0.2623 0.2962 0.3 RANDOM 135.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 1.38 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.995 r_dihedral_angle_3_deg 19.56 r_dihedral_angle_4_deg 18.963 r_dihedral_angle_1_deg 5.765 r_angle_refined_deg 1.407 r_scangle_it 1.327 r_scbond_it 0.704 r_mcangle_it 0.412 r_mcbond_it 0.197 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.995 r_dihedral_angle_3_deg 19.56 r_dihedral_angle_4_deg 18.963 r_dihedral_angle_1_deg 5.765 r_angle_refined_deg 1.407 r_scangle_it 1.327 r_scbond_it 0.704 r_mcangle_it 0.412 r_mcbond_it 0.197 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8985 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing