☰ Navigation Tabs
HER3 extracellular domain in complex with Fab fragment of MOR09825
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M6B PDB ENTRY 1M6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 100 mM bis-tris pH 6.5, 16% (w/v) PEG 10000
Crystal Properties Matthews coefficient Solvent content 3.5 64.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.226 α = 90 b = 140.939 β = 90 c = 180.247 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 111.03 99.9 0.118 0.139 0.053 14.6 6.7 22112 22112 74.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.58 99.9 0.461 0.461 0.208 1.7 6.8 3167
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1M6B 3.4 111.03 22111 1132 99.79 0.1874 0.1842 0.25 0.2291 RANDOM 97.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.8681 25.5365 -29.4046
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 25.59 t_omega_torsion 2.71 t_angle_deg 1.24 t_bond_d 0.009 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 25.59 t_omega_torsion 2.71 t_angle_deg 1.24 t_bond_d 0.009 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_pseud_angle t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7733 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 98
Software Software Software Name Purpose BUSTER-TNT refinement PDB_EXTRACT data extraction BUSTER refinement