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Crystal structure of homoserine kinase from Cytophaga hutchinsonii ATCC 33406, NYSGRC Target 032717.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 298 0.2M Na2HPO4/KH2PO4, pH 6.2,
2.5M sodium chloride
Crystal Properties Matthews coefficient Solvent content 4.13 70.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.608 α = 90 b = 101.608 β = 90 c = 195.982 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2014-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9791 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.9 0.141 7.4 6.3 34842
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 100 0.769 5.7 1730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 29.33 19067 960 99.94 0.1741 0.1723 0.1732 0.209 0.2106 RANDOM 39.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.58 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.886 r_dihedral_angle_4_deg 19.206 r_dihedral_angle_3_deg 15.236 r_dihedral_angle_1_deg 6.36 r_scbond_it 4.285 r_mcangle_it 3.338 r_mcbond_it 1.97 r_angle_refined_deg 1.474 r_chiral_restr 0.098 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.886 r_dihedral_angle_4_deg 19.206 r_dihedral_angle_3_deg 15.236 r_dihedral_angle_1_deg 6.36 r_scbond_it 4.285 r_mcangle_it 3.338 r_mcbond_it 1.97 r_angle_refined_deg 1.474 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2329 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction PHENIX model building SHELXD phasing