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Crystal structure of the human filamin A Ig-like domains 20-21 in complex with migfilin peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BRQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 0.1 M MES pH 6, 1.9 M (NH4)2SO4, 0.1 M (CH3CO2)3Pr
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.154 α = 90 b = 88.154 β = 90 c = 394.709 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2012-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.36 97.9 0.053 0.062 0.062 14.07 3.426 103427 -3 40.614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BRQ 2 43.86 73110 3863 99.57 0.2016 0.2003 0.2112 0.2259 0.2301 RANDOM 25.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.92 -7.92 15.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.241 r_dihedral_angle_4_deg 19.927 r_dihedral_angle_3_deg 14.157 r_dihedral_angle_1_deg 7.054 r_mcangle_it 2.705 r_angle_refined_deg 1.996 r_angle_other_deg 1.946 r_mcbond_it 1.815 r_mcbond_other 1.813 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.241 r_dihedral_angle_4_deg 19.927 r_dihedral_angle_3_deg 14.157 r_dihedral_angle_1_deg 7.054 r_mcangle_it 2.705 r_angle_refined_deg 1.996 r_angle_other_deg 1.946 r_mcbond_it 1.815 r_mcbond_other 1.813 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.014 r_bond_other_d 0.011 r_gen_planes_other 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7957 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement PHASER phasing PDB_EXTRACT data extraction XDS data reduction Coot model building XSCALE data scaling