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Crystal structure of PDE10a with a novel Imidazo[4,5-b]pyridine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium Sulfate, 0.1M MES monohydrate, 10% v/v 1,4-Dioxane, pH 6.5
Crystal Properties Matthews coefficient Solvent content 4.35 71.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 253.283 α = 90 b = 253.283 β = 90 c = 253.283 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 92 2012-02-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.0
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 30 98.6 27.3 4.1 77609
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.08 30 75363 3887 98.6 0.16014 0.15906 0.1757 0.1819 0.1955 RANDOM 33.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 13.582 r_dihedral_angle_4_deg 12.65 r_long_range_B_refined 5.202 r_long_range_B_other 5.201 r_dihedral_angle_1_deg 4.6 r_scangle_other 1.392 r_mcangle_it 1.233 r_mcangle_other 1.233 r_angle_refined_deg 1.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 13.582 r_dihedral_angle_4_deg 12.65 r_long_range_B_refined 5.202 r_long_range_B_other 5.201 r_dihedral_angle_1_deg 4.6 r_scangle_other 1.392 r_mcangle_it 1.233 r_mcangle_other 1.233 r_angle_refined_deg 1.056 r_angle_other_deg 0.869 r_scbond_it 0.838 r_scbond_other 0.838 r_mcbond_it 0.732 r_mcbond_other 0.732 r_chiral_restr 0.151 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4987 Nucleic Acid Atoms Solvent Atoms 553 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement