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Crystal structure of GLTPH R397A IN Sodium-bound state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 PEG400
sodium chloride
citrate/tris
Crystal Properties Matthews coefficient Solvent content 4.05 69.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.579 α = 90 b = 110.579 β = 90 c = 306.923 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-13 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9700 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.41 12 87.3 13.8 11.8 48366
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.41 12 48366 2573 88.71 0.28474 0.28427 0.2715 0.29348 0.2824 RANDOM 151.382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 2.34 2.34 -7.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.822 r_dihedral_angle_3_deg 21.737 r_dihedral_angle_4_deg 20.526 r_dihedral_angle_1_deg 5.485 r_angle_refined_deg 1.468 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.822 r_dihedral_angle_3_deg 21.737 r_dihedral_angle_4_deg 20.526 r_dihedral_angle_1_deg 5.485 r_angle_refined_deg 1.468 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17580 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement