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Structure of ScLPMO10B in complex with zinc.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2 M zinc acetate, 0.1 M sodium cacodylate, 9 % v/v 2-propanol
Crystal Properties Matthews coefficient Solvent content 3.35 63.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.62 α = 90 b = 67.62 β = 90 c = 107.29 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.28 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 35 96 0.08 0.08 13.6 4.5 54273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 76.7 0.228 3.6 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 35.79 51493 2732 95.87 0.12588 0.12499 0.1241 0.14333 0.1408 RANDOM 11.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.13 0.13 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.762 r_dihedral_angle_4_deg 15.669 r_dihedral_angle_3_deg 10.913 r_sphericity_bonded 7.026 r_dihedral_angle_1_deg 6.645 r_rigid_bond_restr 3.675 r_long_range_B_refined 2.796 r_scangle_other 2.1 r_long_range_B_other 1.941 r_scbond_it 1.698
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.762 r_dihedral_angle_4_deg 15.669 r_dihedral_angle_3_deg 10.913 r_sphericity_bonded 7.026 r_dihedral_angle_1_deg 6.645 r_rigid_bond_restr 3.675 r_long_range_B_refined 2.796 r_scangle_other 2.1 r_long_range_B_other 1.941 r_scbond_it 1.698 r_scbond_other 1.697 r_angle_refined_deg 1.4 r_mcangle_it 1.137 r_mcangle_other 1.137 r_mcbond_other 0.896 r_mcbond_it 0.893 r_angle_other_deg 0.819 r_chiral_restr 0.101 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1464 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement