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Structure of ScLPMO10B in complex with copper.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2 M zinc acetate, 0.1 M sodium cacodylate, 9 % v/v 2-propanol
Crystal Properties Matthews coefficient Solvent content 3.4 63.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.533 α = 90 b = 67.533 β = 90 c = 107.214 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.3 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 50 94.2 0.088 13.9 7.9 67598
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.36 63.2 0.509 2.1 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.29 51.4 64129 3418 94.04 0.1245 0.12365 0.1271 0.14044 0.1423 RANDOM 12.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 0.08 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_sphericity_free 25.466 r_dihedral_angle_4_deg 15.606 r_dihedral_angle_3_deg 11.033 r_sphericity_bonded 9.871 r_dihedral_angle_1_deg 6.709 r_long_range_B_refined 3.17 r_long_range_B_other 2.787 r_scangle_other 2.32 r_rigid_bond_restr 2.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_sphericity_free 25.466 r_dihedral_angle_4_deg 15.606 r_dihedral_angle_3_deg 11.033 r_sphericity_bonded 9.871 r_dihedral_angle_1_deg 6.709 r_long_range_B_refined 3.17 r_long_range_B_other 2.787 r_scangle_other 2.32 r_rigid_bond_restr 2.206 r_scbond_it 1.844 r_scbond_other 1.843 r_angle_refined_deg 1.425 r_mcangle_it 1.36 r_mcangle_other 1.36 r_mcbond_it 1.083 r_mcbond_other 1.081 r_angle_other_deg 0.81 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1464 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling