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Crystal structure of DnaT84-153-dT10 ssDNA complex reveals a novel single-stranded DNA binding mode
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.52 51.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.408 α = 87.33 b = 46.689 β = 86.01 c = 54.392 γ = 70.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.54 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.83 38.02 9917
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.83 38.02 9443 475 96.53 0.18611 0.18349 0.1843 0.23827 0.2375 RANDOM 72.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.66 -2.98 0.51 1.18 -2.16 -4.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.676 r_dihedral_angle_3_deg 16.574 r_dihedral_angle_4_deg 16.149 r_long_range_B_refined 10.821 r_long_range_B_other 10.819 r_scangle_other 7.714 r_mcangle_other 6.719 r_mcangle_it 6.008 r_dihedral_angle_1_deg 5.185 r_scbond_other 5.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.676 r_dihedral_angle_3_deg 16.574 r_dihedral_angle_4_deg 16.149 r_long_range_B_refined 10.821 r_long_range_B_other 10.819 r_scangle_other 7.714 r_mcangle_other 6.719 r_mcangle_it 6.008 r_dihedral_angle_1_deg 5.185 r_scbond_other 5.076 r_scbond_it 4.423 r_mcbond_it 3.905 r_mcbond_other 3.902 r_angle_other_deg 3.449 r_angle_refined_deg 1.137 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2884 Nucleic Acid Atoms 200 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling